MACF1

Chr 1AD

microtubule actin crosslinking factor 1

Also known as: ABP620, ACF7, KIAA0754, LIS9, Lnc-PMIF, MACF, OFC4

This gene encodes a large protein containing numerous spectrin and leucine-rich repeat (LRR) domains. The encoded protein is a member of a family of proteins that form bridges between different cytoskeletal elements. This protein facilitates actin-microtubule interactions at the cell periphery and couples the microtubule network to cellular junctions. Alternative splicing results in multiple transcript variants, but the full-length nature of some of these variants has not been determined. [provided by RefSeq, May 2013]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Lissencephaly 9 with complex brainstem malformationMIM #618325
AD

Clinical highlights

Gene-disease validity (ClinGen)
lissencephaly spectrum disorder with complex brainstem malformation · ADModerateconsider for supplementary testing
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
25
Pubs (1 yr)
P/LP submissions
P/LP missense
0.08
LOEUF· LoF intol.
Mechanism
📖
GeneReview available — MACF1
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.08LOEUF
pLI 1.000
Z-score 15.61
OE 0.06 (0.040.08)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint?
3.43Z-score
OE missense 0.82 (0.790.85)
2325 obs / 2840.0 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.06 (0.040.08)
00.351.4
Missense OE?0.82 (0.790.85)
00.61.4
Synonymous OE?1.02
01.21.6
LoF obs/exp: 18 / 318.8Missense obs/exp: 2325 / 2840.0Syn Z: -0.63

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MACF1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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