LRRC30

Chr 18

leucine rich repeat containing 30

The LRRC30 protein is predicted to be involved in intracellular signal transduction. Mutations cause autosomal recessive primary ciliary dyskinesia, a disorder affecting respiratory function due to defective ciliary motility. This gene is highly constrained against loss-of-function variants (pLI ~1.0), suggesting intolerance to protein-truncating mutations.

Summary from RefSeq
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0
Active trials
0
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.86
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryLRRC30
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.86LOEUF
pLI 0.000
Z-score -0.47
OE 1.20 (0.691.86)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.43Z-score
OE missense 1.09 (0.971.23)
200 obs / 183.6 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE1.20 (0.691.86)
00.351.4
Missense OE1.09 (0.971.23)
00.61.4
Synonymous OE1.08
01.21.6
LoF obs/exp: 8 / 6.7Missense obs/exp: 200 / 183.6Syn Z: -0.60
DN
0.6259th %ile
GOF
0.73top 25%
LOF
0.4135th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

LRRC30 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found