LRP6

Chr 12

LDL receptor related protein 6

Also known as: ADCAD2, EVR8, OPTA4, STHAG7

This gene encodes a member of the low density lipoprotein (LDL) receptor gene family. LDL receptors are transmembrane cell surface proteins involved in receptor-mediated endocytosis of lipoprotein and protein ligands. The protein encoded by this gene functions as a receptor or, with Frizzled, a co-receptor for Wnt and thereby transmits the canonical Wnt/beta-catenin signaling cascade. Through its interaction with the Wnt/beta-catenin signaling cascade this gene plays a role in the regulation of cell differentiation, proliferation, and migration and the development of many cancer types. This protein undergoes gamma-secretase dependent RIP- (regulated intramembrane proteolysis) processing but the precise locations of the cleavage sites have not been determined.[provided by RefSeq, Dec 2009]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtCoronary artery disease, autosomal dominant, 2
UniProtTooth agenesis, selective, 7
UniProtVitreoretinopathy, exudative 8
UniProtOsteopetrosis, autosomal dominant 4

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
168
Pubs (1 yr)
P/LP submissions
P/LP missense
0.32
LOEUF· LoF intol.
LOF
Mechanism· G2P
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GeneReview available — LRP6
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.32LOEUF
pLI 0.697
Z-score 6.79
OE 0.22 (0.150.32)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
2.75Z-score
OE missense 0.74 (0.690.79)
657 obs / 887.9 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.22 (0.150.32)
00.351.4
Missense OE?0.74 (0.690.79)
00.61.4
Synonymous OE?1.07
01.21.6
LoF obs/exp: 19 / 87.6Missense obs/exp: 657 / 887.9Syn Z: -0.92

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

LRP6 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.