LONP1

Chr 19AR

lon peptidase 1, mitochondrial

Also known as: CODASS, LON, LONP, LonHS, PIM1, PRSS15, hLON

This gene encodes an ATP-dependent serine protease in the mitochondrial matrix that degrades misfolded, damaged, or short-lived regulatory proteins and participates in mitochondrial gene expression regulation and genome maintenance. Biallelic mutations cause CODAS syndrome, an autosomal recessive disorder characterized by cerebral, ocular, dental, auricular, and skeletal abnormalities. The gene is highly constrained against loss-of-function variants (pLI 0.999, LOEUF 0.244), indicating that heterozygous loss-of-function mutations are likely not tolerated.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismARLOEUF 0.241 OMIM phenotype
Clinical SummaryLONP1
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Gene-Disease Validity (ClinGen)
Leigh syndrome · ARLimited

Limited evidence — not for standalone diagnostic reporting

Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.24LOEUF
pLI 0.999
Z-score 5.37
OE 0.12 (0.060.24)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
0.43Z-score
OE missense 0.95 (0.891.02)
605 obs / 635.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.12 (0.060.24)
00.351.4
Missense OE0.95 (0.891.02)
00.61.4
Synonymous OE1.35
01.21.6
LoF obs/exp: 5 / 43.0Missense obs/exp: 605 / 635.4Syn Z: -4.80

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

LONP1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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