LIFR

Chr 5AR

LIF receptor subunit alpha

Also known as: CD118, LIF-R, SJS2, STWS, SWS

This gene encodes a protein that belongs to the type I cytokine receptor family. This protein combines with a high-affinity converter subunit, gp130, to form a receptor complex that mediates the action of the leukemia inhibitory factor, a polyfunctional cytokine that is involved in cellular differentiation, proliferation and survival in the adult and the embryo. Mutations in this gene cause Schwartz-Jampel syndrome type 2, a disease belonging to the group of the bent-bone dysplasias. A translocation that involves the promoter of this gene, t(5;8)(p13;q12) with the pleiomorphic adenoma gene 1, is associated with salivary gland pleiomorphic adenoma, a common type of benign epithelial tumor of the salivary gland. Multiple splice variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jun 2018]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Stuve-Wiedemann syndrome/Schwartz-Jampel type 2 syndromeMIM #601559
AR

Clinical highlights

Gene-disease validity (ClinGen)
obsolete Stüve-Wiedemann syndrome · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
109
Pubs (1 yr)
P/LP submissions
P/LP missense
0.71
LOEUF
LOF
Mechanism· G2P
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GeneReview available — LIFR
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.71LOEUF
pLI 0.000
Z-score 3.40
OE 0.52 (0.390.71)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.24Z-score
OE missense 0.97 (0.911.04)
563 obs / 579.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.52 (0.390.71)
00.351.4
Missense OE?0.97 (0.911.04)
00.61.4
Synonymous OE?1.02
01.21.6
LoF obs/exp: 31 / 59.3Missense obs/exp: 563 / 579.3Syn Z: -0.21

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

LIFR · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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