LHX1

Chr 17

LIM homeobox 1

Also known as: LIM-1, LIM1

This gene encodes a member of a large protein family which contains the LIM domain, a unique cysteine-rich zinc-binding domain. The encoded protein is a transcription factor important for the development of the renal and urogenital systems. This gene is a candidate for Mayer-Rokitansky-Kuster-Hauser syndrome, a disorder characterized by anomalies in the female genital tract. [provided by RefSeq, Dec 2010]

GeneReviewsOMIMResearchGenerating clinical summary…
0
Active trials
25
Pubs (1 yr)
P/LP submissions
P/LP missense
0.74
LOEUF
DN
Mechanism· predicted
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GeneReview available — LHX1
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.74LOEUF
pLI 0.029
Z-score 2.27
OE 0.35 (0.180.74)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.92Z-score
OE missense 0.64 (0.560.74)
146 obs / 227.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.35 (0.180.74)
00.351.4
Missense OE?0.64 (0.560.74)
00.61.4
Synonymous OE?1.24
01.21.6
LoF obs/exp: 5 / 14.3Missense obs/exp: 146 / 227.6Syn Z: -1.89

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

LHX1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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