LDB3

Chr 10ADAR

LIM domain binding 3

Also known as: CMD1C, CMD2L, CMH24, CMPD3, CYPHER, LDB3Z1, LDB3Z4, LVNC3

This gene encodes a PDZ domain-containing protein. PDZ motifs are modular protein-protein interaction domains consisting of 80-120 amino acid residues. PDZ domain-containing proteins interact with each other in cytoskeletal assembly or with other proteins involved in targeting and clustering of membrane proteins. The protein encoded by this gene interacts with alpha-actinin-2 through its N-terminal PDZ domain and with protein kinase C via its C-terminal LIM domains. The LIM domain is a cysteine-rich motif defined by 50-60 amino acids containing two zinc-binding modules. This protein also interacts with all three members of the myozenin family. Mutations in this gene have been associated with myofibrillar myopathy and dilated cardiomyopathy. Alternatively spliced transcript variants encoding different isoforms have been identified; all isoforms have N-terminal PDZ domains while only longer isoforms (1, 2 and 5) have C-terminal LIM domains. [provided by RefSeq, Jan 2010]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Cardiomyopathy, dilated, 1C, with or without LVNCMIM #601493
AD
Cardiomyopathy, dilated, 2LMIM #621237
AR
Cardiomyopathy, hypertrophic, 24MIM #601493
AD
Left ventricular noncompaction 3MIM #601493
AD
Myopathy, myofibrillar, 4MIM #609452
AD
UniProtCardiomyopathy, familial hypertrophic, 24

Clinical highlights

Gene-disease validity (ClinGen)
arrhythmogenic right ventricular cardiomyopathy · ADDisputedevidence questions this relationship4 gene-disease associations curated in total
3
Active trials
Pubs (1 yr)
P/LP submissions
P/LP missense
0.68
LOEUF
Multiple*
Mechanism· predicted
📖
GeneReview available — LDB3
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.68LOEUF
pLI 0.000
Z-score 2.99
OE 0.43 (0.280.68)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.29Z-score
OE missense 0.96 (0.891.04)
431 obs / 448.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.43 (0.280.68)
00.351.4
Missense OE?0.96 (0.891.04)
00.61.4
Synonymous OE?1.07
01.21.6
LoF obs/exp: 14 / 32.4Missense obs/exp: 431 / 448.1Syn Z: -0.71

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

LDB3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.