LAT2

Chr 7

linker for activation of T cells family member 2

Also known as: HSPC046, LAB, NTAL, WBSCR15, WBSCR5, WSCR5

This gene is one of the contiguous genes at 7q11.23 commonly deleted in Williams syndrome, a multisystem developmental disorder. This gene consists of at least 14 exons, and its alternative splicing generates 3 transcript variants, all encoding the same protein. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…
1
Active trials
32
Pubs (1 yr)
P/LP submissions
P/LP missense
0.83
LOEUF
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.83LOEUF
pLI 0.000
Z-score 2.09
OE 0.48 (0.290.83)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-0.02Z-score
OE missense 1.01 (0.881.15)
145 obs / 144.2 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.48 (0.290.83)
00.351.4
Missense OE?1.01 (0.881.15)
00.61.4
Synonymous OE?0.77
01.21.6
LoF obs/exp: 9 / 18.8Missense obs/exp: 145 / 144.2Syn Z: 1.39

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

LAT2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.