LAMA3

Chr 18AR

laminin subunit alpha 3

Also known as: BM600, E170, JEB2A, JEB2B, JEB2C, LAMNA, LOCS

The protein encoded by this gene belongs to the laminin family of secreted molecules. Laminins are heterotrimeric molecules that consist of alpha, beta, and gamma subunits that assemble through a coiled-coil domain. Laminins are essential for formation and function of the basement membrane and have additional functions in regulating cell migration and mechanical signal transduction. This gene encodes an alpha subunit and is responsive to several epithelial-mesenchymal regulators including keratinocyte growth factor, epidermal growth factor and insulin-like growth factor. Mutations in this gene have been identified as the cause of Herlitz type junctional epidermolysis bullosa and laryngoonychocutaneous syndrome. Alternative splicing and alternative promoter usage result in multiple transcript variants. [provided by RefSeq, Dec 2014]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Epidermolysis bullosa, junctional 2A, intermediateMIM #619783
AR
Epidermolysis bullosa, junctional 2B, severeMIM #619784
AR
Epidermolysis bullosa, junctional 2C, laryngoonychocutaneousMIM #245660
AR

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
Pubs (1 yr)
P/LP submissions
P/LP missense
0.69
LOEUF
LOF
Mechanism· G2P
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GeneReview available — LAMA3
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.69LOEUF
pLI 0.000
Z-score 5.05
OE 0.59 (0.500.69)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.49Z-score
OE missense 0.97 (0.931.01)
1752 obs / 1810.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.59 (0.500.69)
00.351.4
Missense OE?0.97 (0.931.01)
00.61.4
Synonymous OE?0.98
01.21.6
LoF obs/exp: 102 / 173.9Missense obs/exp: 1752 / 1810.3Syn Z: 0.37

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

LAMA3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.