KRTAP10-3

Chr 21

keratin associated protein 10-3

Also known as: KAP10.3, KAP18-3, KAP18.3, KRTAP10.3, KRTAP18-3, KRTAP18.3

This protein is a high-sulfur keratin-associated protein that forms cross-linked disulfide bonds with hair keratins to create the rigid matrix structure of hair shafts. Mutations in KRTAP10-3 cause autosomal recessive woolly hair, a condition characterized by tightly curled, fine hair texture present from birth. The gene shows low constraint against loss-of-function variants, consistent with its hair-specific function and recessive inheritance pattern.

Summary from RefSeq, UniProt
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0
Active trials
0
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.41
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryKRTAP10-3
Population Constraint (gnomAD)
Low constraint (pLI 0.02) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.41LOEUF
pLI 0.024
Z-score 0.96
OE 0.56 (0.251.41)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-1.68Z-score
OE missense 1.41 (1.251.59)
187 obs / 132.7 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.56 (0.251.41)
00.351.4
Missense OE1.41 (1.251.59)
00.61.4
Synonymous OE1.40
01.21.6
LoF obs/exp: 3 / 5.4Missense obs/exp: 187 / 132.7Syn Z: -2.42
DN
0.92top 5%
GOF
0.80top 10%
LOF
0.2873th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

KRTAP10-3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found