KRT5

Chr 12

keratin 5

Also known as: CK5, DDD, DDD1, EBS1, EBS2, EBS2A, EBS2B, EBS2C

The protein encoded by this gene is a member of the keratin gene family. The type II cytokeratins consist of basic or neutral proteins which are arranged in pairs of heterotypic keratin chains coexpressed during differentiation of simple and stratified epithelial tissues. This type II cytokeratin is specifically expressed in the basal layer of the epidermis with family member KRT14. Mutations in these genes have been associated with a complex of diseases termed epidermolysis bullosa simplex. The type II cytokeratins are clustered in a region of chromosome 12q12-q13. [provided by RefSeq, Jul 2008]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtEpidermolysis bullosa simplex 2A, generalized severe
UniProtEpidermolysis bullosa simplex 2B, generalized intermediate
UniProtEpidermolysis bullosa simplex 2C, localized
UniProtEpidermolysis bullosa simplex 2D, generalized, intermediate or severe, autosomal recessive

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
123
Pubs (1 yr)
P/LP submissions
P/LP missense
0.44
LOEUF
Multiple*
Mechanism· G2P
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GeneReview available — KRT5
Authoritative clinical overview · Recommended first read
Open GeneReview ↗
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.44LOEUF
pLI 0.642
Z-score 3.41
OE 0.19 (0.090.44)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
0.23Z-score
OE missense 0.97 (0.881.06)
342 obs / 353.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.19 (0.090.44)
00.351.4
Missense OE?0.97 (0.881.06)
00.61.4
Synonymous OE?1.09
01.21.6
LoF obs/exp: 4 / 20.7Missense obs/exp: 342 / 353.9Syn Z: -0.88

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

KRT5 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.