KIF12

Chr 9AR

kinesin family member 12

Also known as: PFIC8

This protein is a kinesin superfamily molecular motor that transports cargo along microtubules and negatively regulates fatty acid biosynthesis by promoting degradation of acetyl-CoA carboxylase 1. Biallelic mutations cause progressive familial intrahepatic cholestasis type 8, inherited in an autosomal recessive pattern. The gene is not highly constrained against loss-of-function variants, consistent with the recessive inheritance pattern observed clinically.

OMIMResearchSummary from RefSeq, OMIM, UniProt
MultiplemechanismARLOEUF 0.971 OMIM phenotype
Clinical SummaryKIF12
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.97LOEUF
pLI 0.000
Z-score 1.70
OE 0.68 (0.490.97)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.66Z-score
OE missense 0.89 (0.810.99)
276 obs / 308.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.68 (0.490.97)
00.351.4
Missense OE0.89 (0.810.99)
00.61.4
Synonymous OE0.96
01.21.6
LoF obs/exp: 23 / 33.6Missense obs/exp: 276 / 308.4Syn Z: 0.34
DN
0.78top 25%
GOF
0.74top 25%
LOF
0.3261th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

KIF12 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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