KIDINS220

Chr 2

kinase D interacting substrate 220

Also known as: ARMS, SINO, VENARG

This gene encodes a transmembrane protein that is preferentially expressed in the nervous system where it controls neuronal cell survival, differentiation into exons and dendrites, and synaptic plasticity. The encoded protein interacts with membrane receptors, cytosolic signaling components, and cytoskeletal proteins, serving as a scaffold that mediates crosstalk between the neurotrophin pathway and several other intracellular signaling pathways. Aberrant expression of this gene is associated with the onset of various neuropsychiatric disorders and neurodegenerative diseases, including Alzheimer's disease. Naturally occurring mutations in this gene are associated with a syndrome characterized by spastic paraplegia, intellectual disability, nystagmus and obesity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2017]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtSpastic paraplegia, intellectual disability, nystagmus, and obesity
UniProtVentriculomegaly and arthrogryposis

Clinical highlights

Gene-disease validity (ClinGen)
ventriculomegaly and arthrogryposis · ARDefinitivesufficient evidence for diagnostic panels2 gene-disease associations curated in total
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
12
Pubs (1 yr)
P/LP submissions
P/LP missense
0.35
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.35LOEUF
pLI 0.074
Z-score 6.41
OE 0.24 (0.170.35)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
2.26Z-score
OE missense 0.80 (0.750.84)
780 obs / 979.1 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.24 (0.170.35)
00.351.4
Missense OE?0.80 (0.750.84)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 20 / 83.0Missense obs/exp: 780 / 979.1Syn Z: 0.22

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

KIDINS220 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.