KDM4C

Chr 9

lysine demethylase 4C

Also known as: GASC1, JHDM3C, JMJD2C, TDRD14C

The KDM4C protein is a histone demethylase that specifically removes trimethyl groups from lysine-9 and lysine-36 residues of histone H3, playing a central role in gene expression regulation through chromatin modification. Mutations in this gene cause intellectual disability with dysmorphic features, which follows an autosomal dominant inheritance pattern. The condition typically involves developmental delays and distinctive facial features, representing a relatively recently described neurodevelopmental disorder.

OMIMResearchSummary from RefSeq, UniProt
LOEUF 0.54
Clinical SummaryKDM4C
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.54LOEUF
pLI 0.000
Z-score 4.34
OE 0.37 (0.270.54)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
-0.49Z-score
OE missense 1.06 (0.991.13)
622 obs / 588.6 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.37 (0.270.54)
00.351.4
Missense OE1.06 (0.991.13)
00.61.4
Synonymous OE1.21
01.21.6
LoF obs/exp: 21 / 56.1Missense obs/exp: 622 / 588.6Syn Z: -2.39

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

KDM4C · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →