KCNA2

Chr 1AD

potassium voltage-gated channel subfamily A member 2

Also known as: DEE32, EIEE32, HBK5, HK4, HUKIV, KV1.2, MK2, NGK1

Potassium channels represent the most complex class of voltage-gated ion channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to have human homolog(s). This gene encodes a member of the potassium channel, voltage-gated, shaker-related subfamily. This member contains six membrane-spanning domains with a shaker-type repeat in the fourth segment. It belongs to the delayed rectifier class, members of which allow nerve cells to efficiently repolarize following an action potential. The coding region of this gene is intronless, and the gene is clustered with genes KCNA3 and KCNA10 on chromosome 1. [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Developmental and epileptic encephalopathy 32MIM #616366
AD
UniProtNizon-Isidor syndrome

Clinical highlights

Gene-disease validity (ClinGen)
genetic developmental and epileptic encephalopathy · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Both gain of function and loss of function mechanisms are described for this gene and which one applies is variant-dependent. Do not assume a null variant is — or isn't — the pathogenic class without checking the specific variant against curated evidence.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
26
Pubs (1 yr)
P/LP submissions
P/LP missense
0.38
LOEUF
GOF/LOF*
Mechanism· annotated
📖
GeneReview available — KCNA2
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.38LOEUF
pLI 0.911
Z-score 3.32
OE 0.12 (0.050.38)
Highly constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
3.83Z-score
OE missense 0.35 (0.300.42)
99 obs / 279.1 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.12 (0.050.38)
00.351.4
Missense OE?0.35 (0.300.42)
00.61.4
Synonymous OE?1.00
01.21.6
LoF obs/exp: 2 / 16.6Missense obs/exp: 99 / 279.1Syn Z: -0.03

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

KCNA2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.