ITPR3

Chr 6

inositol 1,4,5-trisphosphate receptor type 3

Also known as: CMT1J, IMD132, IMD133, IP3R, IP3R-3, IP3R3

This gene encodes a receptor for inositol 1,4,5-trisphosphate, a second messenger that mediates the release of intracellular calcium. The receptor contains a calcium channel at the C-terminus and the ligand-binding site at the N-terminus. Knockout studies in mice suggest that type 2 and type 3 inositol 1,4,5-trisphosphate receptors play a key role in exocrine secretion underlying energy metabolism and growth. [provided by RefSeq, Aug 2010]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtCharcot-Marie-Tooth disease, demyelinating, type 1J
UniProtImmunodeficiency 133 with ectodermal dysplasia with or without peripheral neuropathy

Clinical highlights

Gene-disease validity (ClinGen)
Charcot-Marie-Tooth disease, demyelinating, type 1J · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
A dominant-negative effect is the curated mechanism (Gene2Phenotype), so a variant that simply removes the protein may not be the pathogenic class here — missense variants in functional domains often carry more weight.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
49
Pubs (1 yr)
P/LP submissions
P/LP missense
0.57
LOEUF
DN
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Missense constrained — critical functional residues
LoF Constraint?
0.57LOEUF
pLI 0.000
Z-score 5.70
OE 0.46 (0.370.57)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
4.55Z-score
OE missense 0.69 (0.650.72)
1144 obs / 1667.0 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.46 (0.370.57)
00.351.4
Missense OE?0.69 (0.650.72)
00.61.4
Synonymous OE?0.92
01.21.6
LoF obs/exp: 59 / 128.8Missense obs/exp: 1144 / 1667.0Syn Z: 1.69

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ITPR3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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