ITGAD

Chr 16

integrin subunit alpha D

Also known as: ADB2, CD11D

The protein encoded by this gene forms the alpha subunit of integrin alpha-D/beta-2, a cell surface receptor that mediates leukocyte adhesion and activation by binding to ICAM3 and VCAM1. The gene is not highly constrained against loss-of-function variants and no established Mendelian diseases have been definitively linked to ITGAD mutations. This gene primarily functions in myeloid leukocyte biology and may have roles in immune processes including phagocytosis and vascular inflammation.

OMIMResearchSummary from RefSeq, UniProt
MultiplemechanismLOEUF 0.87
Clinical SummaryITGAD
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.87LOEUF
pLI 0.000
Z-score 2.44
OE 0.67 (0.530.87)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.85Z-score
OE missense 0.91 (0.850.97)
628 obs / 690.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.67 (0.530.87)
00.351.4
Missense OE0.91 (0.850.97)
00.61.4
Synonymous OE1.08
01.21.6
LoF obs/exp: 43 / 64.0Missense obs/exp: 628 / 690.9Syn Z: -1.02
DN
0.6939th %ile
GOF
0.7029th %ile
LOF
0.2679th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ITGAD · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC