IL6ST

Chr 5ADAR

interleukin 6 cytokine family signal transducer

Also known as: CD130, CDW130, GP130, HIES4, HIES4A, HIES4B, IL-6RB, IMD94

The protein encoded by this gene is a signal transducer shared by many cytokines, including interleukin 6 (IL6), ciliary neurotrophic factor (CNTF), leukemia inhibitory factor (LIF), and oncostatin M (OSM). This protein functions as a part of the cytokine receptor complex. The activation of this protein is dependent upon the binding of cytokines to their receptors. vIL6, a protein related to IL6 and encoded by the Kaposi sarcoma-associated herpesvirus, can bypass the interleukin 6 receptor (IL6R) and directly activate this protein. Knockout studies in mice suggest that this gene plays a critical role in regulating myocyte apoptosis. Alternatively spliced transcript variants have been described. A related pseudogene has been identified on chromosome 17. [provided by RefSeq, May 2014]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

?Immunodeficiency 94 with autoinflammation and dysmorphic faciesMIM #619750
AD
Hyper-IgE syndrome 4A, autosomal dominant, with recurrent infectionsMIM #619752
AD
Hyper-IgE syndrome 4B, autosomal recessive, with recurrent infectionsMIM #618523
AR
Stuve-Wiedemann syndrome 2MIM #619751
AR

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
2
Active trials
81
Pubs (1 yr)
P/LP submissions
P/LP missense
0.23
LOEUF· LoF intol.
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.23LOEUF
pLI 1.000
Z-score 5.61
OE 0.11 (0.060.23)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
1.06Z-score
OE missense 0.86 (0.800.94)
408 obs / 472.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.11 (0.060.23)
00.351.4
Missense OE?0.86 (0.800.94)
00.61.4
Synonymous OE?1.01
01.21.6
LoF obs/exp: 5 / 46.2Missense obs/exp: 408 / 472.8Syn Z: -0.09

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

IL6ST · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.