IL2RA

Chr 10AR

interleukin 2 receptor subunit alpha

Also known as: CD25, IDDM10, IL2R, IMD41, TCGFR, p55

The interleukin 2 (IL2) receptor alpha (IL2RA) and beta (IL2RB) chains, together with the common gamma chain (IL2RG), constitute the high-affinity IL2 receptor. Homodimeric alpha chains (IL2RA) result in low-affinity receptor, while homodimeric beta (IL2RB) chains produce a medium-affinity receptor. Normally an integral-membrane protein, soluble IL2RA has been isolated and determined to result from extracellular proteolyisis. Alternately-spliced IL2RA mRNAs have been isolated, but the significance of each is presently unknown. Mutations in this gene are associated with interleukin 2 receptor alpha deficiency. Patients with severe Coronavirus Disease 2019 (COVID-19), the disease caused by the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), have significantly elevated levels of IL2R in their plasma. Similarly, serum IL-2R levels are found to be elevated in patients with different types of carcinomas. Certain IL2RA and IL2RB gene polymorphisms have been associated with lung cancer risk. [provided by RefSeq, Jul 2020]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

{Diabetes, mellitus, insulin-dependent, susceptibility to, 10}MIM #601942
Immunodeficiency 41 with lymphoproliferation and autoimmunityMIM #606367
AR
UniProtType 1 diabetes mellitus 10

Clinical highlights

Gene-disease validity (ClinGen)
immunodeficiency due to CD25 deficiency · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
3
Active trials
88
Pubs (1 yr)
P/LP submissions
P/LP missense
0.66
LOEUF
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.66LOEUF
pLI 0.055
Z-score 2.55
OE 0.31 (0.160.66)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.36Z-score
OE missense 0.92 (0.801.05)
145 obs / 157.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.31 (0.160.66)
00.351.4
Missense OE?0.92 (0.801.05)
00.61.4
Synonymous OE?1.14
01.21.6
LoF obs/exp: 5 / 16.0Missense obs/exp: 145 / 157.8Syn Z: -0.84

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

IL2RA · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.