IL17F

Chr 6

interleukin 17F

Also known as: CANDF6, IL-17F, ML-1, ML1

The protein encoded by this gene is a cytokine that shares sequence similarity with IL17. This cytokine is expressed by activated T cells, and has been shown to stimulate the production of several other cytokines, including IL6, IL8, and CSF2/GM_CSF. This cytokine is also found to inhibit the angiogenesis of endothelial cells and induce endothelial cells to produce IL2, TGFB1/TGFB, and monocyte chemoattractant protein-1. [provided by RefSeq, Jul 2008]

Primary Disease Associations & Inheritance

?Candidiasis, familial, 6, autosomal dominantMIM #613956
190
ClinVar variants
11
Pathogenic / LP
0.04
pLI score
3
Active trials
Clinical SummaryIL17F
Population Constraint (gnomAD)
Low constraint (pLI 0.04) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
11 Pathogenic / Likely Pathogenic· 105 VUS of 190 total submissions
💊
Clinical Trials
3 active or recruiting trials — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?LOEUF (Loss-of-function Observed/Expected Upper bound Fraction) is the upper bound of the 90% CI for LoF OE — the preferred gnomAD v4 metric. Lower = more intolerant to LoF. LOEUF < 0.35 = highly constrained.
1.18LOEUF
pLI 0.039
Z-score 1.29
OE 0.46 (0.211.18)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?Missense Z-score: standard deviations fewer missense variants observed vs. expected. Z > 3.09 (p < 0.001) = gene does not tolerate missense variation. OE missense < 0.6 is also considered constrained.
-0.16Z-score
OE missense 1.05 (0.891.23)
103 obs / 98.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?Shaded band = 90% confidence interval. Vertical tick = point estimate. Grey threshold line = gnomAD constraint cutoff for that variant class.
LoF OE?Ratio of observed to expected LoF variants. Upper CI bound (LOEUF) ≤ 0.35 = strong LoF constraint signal.0.46 (0.211.18)
00.351.4
Missense OE?Ratio of observed to expected missense variants. OE ≤ 0.6 = fewer missense variants than expected by chance.1.05 (0.891.23)
00.61.4
Synonymous OE?Control metric — synonymous variants are largely neutral and expected near OE = 1.0. Significant deviation may indicate annotation issues.1.40
01.21.6
LoF obs/exp: 3 / 6.6Missense obs/exp: 103 / 98.5Syn Z: -2.00

ClinVar Variant Classifications

190 submitted variants in ClinVar

Classification Summary

Pathogenic9
Likely Pathogenic2
VUS105
Likely Benign49
Benign14
Conflicting11
9
Pathogenic
2
Likely Pathogenic
105
VUS
49
Likely Benign
14
Benign
11
Conflicting

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
9
0
9
Likely Pathogenic
0
0
2
0
2
VUS
4
90
11
0
105
Likely Benign
0
1
8
40
49
Benign
0
3
9
2
14
Conflicting
11
Total4943942190

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

IL17F · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

OMIM — Genotype-Phenotype Relationships

1 OMIM entry

INTERLEUKIN 17F; IL17F
MIM #606496 · *

?Candidiasis, familial, 6, autosomal dominant

MIM #613956

Molecular basis of disorder known

Clinical Literature
Landmark / reviewRecent case evidence
Key Publications
Landmark & review papers · by relevance
PubMed
The IL-17 Family of Cytokines in Health and Disease.
McGeachy MJ et al.·Immunity
2019Review
The IL-17 Family of Cytokines in Psoriasis: IL-17A and Beyond.
Brembilla NC et al.·Front Immunol
2018Review
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