IL15RA

Chr 10

interleukin 15 receptor subunit alpha

Also known as: CD215

The interleukin-15 receptor alpha subunit functions as a high-affinity cytokine receptor that binds interleukin-15 and enhances cell proliferation and survival through activation of anti-apoptotic proteins. Mutations cause severe combined immunodeficiency with autosomal recessive inheritance. This gene shows extremely high constraint against loss-of-function variants (pLI near 1.0), indicating that such mutations are likely to cause severe phenotypes.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
10
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.58
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryIL15RA
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.58LOEUF
pLI 0.000
Z-score 0.23
OE 0.92 (0.551.58)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.23Z-score
OE missense 0.95 (0.821.09)
139 obs / 146.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.92 (0.551.58)
00.351.4
Missense OE0.95 (0.821.09)
00.61.4
Synonymous OE0.97
01.21.6
LoF obs/exp: 9 / 9.8Missense obs/exp: 139 / 146.8Syn Z: 0.18
DN
0.6745th %ile
GOF
0.75top 25%
LOF
0.2581th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

IL15RA · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →