IDI1

Chr 10

isopentenyl-diphosphate delta isomerase 1

IDI1 encodes a peroxisomal enzyme that catalyzes the interconversion of isopentenyl diphosphate to dimethylallyl diphosphate, essential substrates for cholesterol synthesis. Biallelic mutations cause autosomal recessive intellectual disability with seizures and cataracts, typically presenting in infancy or early childhood. The gene is not highly constrained against loss-of-function variants.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 1.08
Clinical SummaryIDI1
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
Some data sources returned errors (1)

ncbi: Error: NCBI fetch failed: 429 https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.08LOEUF
pLI 0.000
Z-score 1.35
OE 0.62 (0.371.08)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.64Z-score
OE missense 0.85 (0.740.99)
130 obs / 152.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.62 (0.371.08)
00.351.4
Missense OE0.85 (0.740.99)
00.61.4
Synonymous OE1.22
01.21.6
LoF obs/exp: 9 / 14.6Missense obs/exp: 130 / 152.2Syn Z: -1.29
DN
0.6841th %ile
GOF
0.5954th %ile
LOF
0.2483th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

IDI1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →