HTRA2

Chr 2AR

HtrA serine peptidase 2

Also known as: MGCA8, OMI, PARK13, PRSS25

This gene encodes a serine protease. The protein has been localized in the endoplasmic reticulum and interacts with an alternatively spliced form of mitogen-activated protein kinase 14. The protein has also been localized to the mitochondria with release to the cytosol following apoptotic stimulus. The protein is thought to induce apoptosis by binding the apoptosis inhibitory protein baculoviral IAP repeat-containing 4. Nuclear localization of this protein has also been observed. Alternate splicing of this gene results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Mar 2016]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

{Parkinson disease 13}MIM #610297
3-methylglutaconic aciduria, type VIIIMIM #617248
AR

Clinical highlights

Gene-disease validity (ClinGen)
3-methylglutaconic aciduria type 8 · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
30
Pubs (1 yr)
P/LP submissions
P/LP missense
0.76
LOEUF
LOF
Mechanism· G2P
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GeneReview available — HTRA2
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.76LOEUF
pLI 0.004
Z-score 2.31
OE 0.40 (0.230.76)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.70Z-score
OE missense 0.70 (0.630.80)
186 obs / 263.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.40 (0.230.76)
00.351.4
Missense OE?0.70 (0.630.80)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 7 / 17.4Missense obs/exp: 186 / 263.9Syn Z: 0.05

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HTRA2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.