HS3ST6

Chr 16AD

heparan sulfate-glucosamine 3-sulfotransferase 6

Also known as: 3-OST-6, 3OST6, HAE8, HS3ST5

Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process. Predicted to act upstream of or within blastocyst hatching. Predicted to be located in Golgi membrane. Implicated in hereditary angioedema. [provided by Alliance of Genome Resources, Jul 2025]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

?Angioedema, hereditary, 8MIM #619367
AD

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
4
Pubs (1 yr)
P/LP submissions
P/LP missense
0.88
LOEUF
GOF
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.88LOEUF
pLI 0.436
Z-score 1.76
OE 0.18 (0.070.88)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-0.04Z-score
OE missense 1.01 (0.891.14)
171 obs / 169.7 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.18 (0.070.88)
00.351.4
Missense OE?1.01 (0.891.14)
00.61.4
Synonymous OE?0.89
01.21.6
LoF obs/exp: 1 / 5.4Missense obs/exp: 171 / 169.7Syn Z: 0.78

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HS3ST6 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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