HS3ST3B1

Chr 17

heparan sulfate-glucosamine 3-sulfotransferase 3B1

Also known as: 3-OST-3B, 3OST3B1, h3-OST-3B

This gene encodes a heparan sulfate 3-O-sulfotransferase that catalyzes the transfer of sulfate groups to specific glucosamine residues in heparan sulfate chains, modifying these glycosaminoglycans to create binding sites for various proteins including viral entry receptors. Mutations cause autosomal recessive intellectual disability with seizures and hypotonia. The gene shows moderate constraint to loss-of-function variants, and the resulting neurodevelopmental disorder typically manifests in early childhood.

OMIMResearchSummary from RefSeq, UniProt
LOEUF 0.78
Clinical SummaryHS3ST3B1
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.25) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.78LOEUF
pLI 0.293
Z-score 1.98
OE 0.25 (0.100.78)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.46Z-score
OE missense 0.92 (0.821.02)
223 obs / 243.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.25 (0.100.78)
00.351.4
Missense OE0.92 (0.821.02)
00.61.4
Synonymous OE0.93
01.21.6
LoF obs/exp: 2 / 8.1Missense obs/exp: 223 / 243.1Syn Z: 0.63

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HS3ST3B1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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