HPS6

Chr 10AR

HPS6 biogenesis of lysosomal organelles complex 2 subunit 3

Also known as: BLOC2S3

This intronless gene encodes a protein that may play a role in organelle biogenesis associated with melanosomes, platelet dense granules, and lysosomes. This protein interacts with Hermansky-Pudlak syndrome 5 protein. Mutations in this gene are associated with Hermansky-Pudlak syndrome type 6. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Hermansky-Pudlak syndrome 6MIM #614075
AR
Hermansky-Pudlak syndrome 6MIM #614075
AR

Clinical highlights

Gene-disease validity (ClinGen)
Hermansky-Pudlak syndrome 6 · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
Pubs (1 yr)
P/LP submissions
P/LP missense
0.71
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.71LOEUF
pLI 0.000
Z-score 2.61
OE 0.42 (0.260.71)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-0.03Z-score
OE missense 1.00 (0.921.09)
404 obs / 402.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.42 (0.260.71)
00.351.4
Missense OE?1.00 (0.921.09)
00.61.4
Synonymous OE?1.15
01.21.6
LoF obs/exp: 10 / 23.7Missense obs/exp: 404 / 402.5Syn Z: -1.65

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HPS6 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →