HPD

Chr 12ADAR

4-hydroxyphenylpyruvate dioxygenase

Also known as: 4-HPPD, 4HPPD, GLOD3, HPPD, HPPDASE, PPD

The protein encoded by this gene is an enzyme in the catabolic pathway of tyrosine. The encoded protein catalyzes the conversion of 4-hydroxyphenylpyruvate to homogentisate. Defects in this gene are a cause of tyrosinemia type 3 (TYRO3) and hawkinsinuria (HAWK). Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2010]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

HawkinsinuriaMIM #140350
AD
Tyrosinemia, type IIIMIM #276710
AR
UniProtTyrosinemia 3

Clinical highlights

Gene-disease validity (ClinGen)
tyrosinemia type III · ARDefinitivesufficient evidence for diagnostic panels2 gene-disease associations curated in total
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
354
Pubs (1 yr)
P/LP submissions
P/LP missense
0.67
LOEUF
Multiple*
Mechanism· G2P
📖
GeneReview available — HPD
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.67LOEUF
pLI 0.001
Z-score 2.84
OE 0.39 (0.240.67)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.73Z-score
OE missense 0.86 (0.770.97)
194 obs / 224.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.39 (0.240.67)
00.351.4
Missense OE?0.86 (0.770.97)
00.61.4
Synonymous OE?1.09
01.21.6
LoF obs/exp: 10 / 25.5Missense obs/exp: 194 / 224.8Syn Z: -0.73

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HPD · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.