HNRNPA1

Chr 12AD

heterogeneous nuclear ribonucleoprotein A1

Also known as: ALS19, ALS20, HNRPA1, HNRPA1L3, IBMPFD3, MPD3, UP 1, hnRNP A1

This gene encodes a member of a family of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs), which are RNA-binding proteins that associate with pre-mRNAs in the nucleus and influence pre-mRNA processing, as well as other aspects of mRNA metabolism and transport. The protein encoded by this gene is one of the most abundant core proteins of hnRNP complexes and plays a key role in the regulation of alternative splicing. Mutations in this gene have been observed in individuals with amyotrophic lateral sclerosis 20. Multiple alternatively spliced transcript variants have been found. There are numerous pseudogenes of this gene distributed throughout the genome. [provided by RefSeq, Feb 2016]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

?Inclusion body myopathy with early-onset Paget disease without frontotemporal dementia 3MIM #615424
AD
?Myopathy, distal, 3MIM #610099
AD
Amyotrophic lateral sclerosis 20MIM #615426
AD

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
102
Pubs (1 yr)
P/LP submissions
P/LP missense
0.15
LOEUF· LoF intol.
LOF
Mechanism· predicted
📖
GeneReview available — HNRNPA1
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.15LOEUF
pLI 0.999
Z-score 4.18
OE 0.00 (0.000.15)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint?
2.82Z-score
OE missense 0.45 (0.380.54)
94 obs / 208.7 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.00 (0.000.15)
00.351.4
Missense OE?0.45 (0.380.54)
00.61.4
Synonymous OE?1.18
01.21.6
LoF obs/exp: 0 / 20.3Missense obs/exp: 94 / 208.7Syn Z: -1.19

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HNRNPA1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.