HGSNAT

Chr 8AR

heparan-alpha-glucosaminide N-acetyltransferase

Also known as: HGNAT, MPS3C, RP73, TMEM76

This gene encodes a lysosomal acetyltransferase, which is one of several enzymes involved in the lysosomal degradation of heparin sulfate. Mutations in this gene are associated with Sanfilippo syndrome C, one type of the lysosomal storage disease mucopolysaccaridosis III, which results from impaired degradation of heparan sulfate. [provided by RefSeq, Jan 2009]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Mucopolysaccharidosis type IIIC (Sanfilippo C)MIM #252930
AR
Retinitis pigmentosa 73MIM #616544
AR

Clinical highlights

Gene-disease validity (ClinGen)
inherited retinal dystrophy · ARDefinitivesufficient evidence for diagnostic panels2 gene-disease associations curated in total
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
13
Pubs (1 yr)
P/LP submissions
P/LP missense
0.73
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.73LOEUF
pLI 0.000
Z-score 2.85
OE 0.49 (0.340.73)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.71Z-score
OE missense 0.89 (0.810.98)
283 obs / 318.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.49 (0.340.73)
00.351.4
Missense OE?0.89 (0.810.98)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 18 / 36.6Missense obs/exp: 283 / 318.5Syn Z: 0.05

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HGSNAT · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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