HEXA

Chr 15AR

hexosaminidase subunit alpha

Also known as: TSD

This gene encodes a member of the glycosyl hydrolase 20 family of proteins. The encoded preproprotein is proteolytically processed to generate the alpha subunit of the lysosomal enzyme beta-hexosaminidase. This enzyme, together with the cofactor GM2 activator protein, catalyzes the degradation of the ganglioside GM2, and other molecules containing terminal N-acetyl hexosamines. Mutations in this gene lead to an accumulation of GM2 ganglioside in neurons, the underlying cause of neurodegenerative disorders termed the GM2 gangliosidoses, including Tay-Sachs disease (GM2-gangliosidosis type I). Alternative splicing results in multiple transcript variants, at least one of which encodes a preproprotein that is proteolytically processed. [provided by RefSeq, Jan 2016]

OMIMResearchGenerating clinical summary…
LOFmechanismARLOEUF 0.973 OMIM phenotypes
Clinical SummaryHEXA
🧬
Gene-Disease Validity (ClinGen)
Tay-Sachs disease · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
💊
Clinical Trials
5 active or recruiting trials — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.97LOEUF
pLI 0.000
Z-score 1.68
OE 0.68 (0.490.97)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-0.41Z-score
OE missense 1.07 (0.971.18)
297 obs / 277.8 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.68 (0.490.97)
00.351.4
Missense OE?1.07 (0.971.18)
00.61.4
Synonymous OE?0.96
01.21.6
LoF obs/exp: 22 / 32.3Missense obs/exp: 297 / 277.8Syn Z: 0.32
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveHEXA-related GM2-gangliosidosisLOFAR

This gene — mechanism propensity

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.6355th %ile
GOF
0.5857th %ile
LOF
0.2386th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HEXA · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.