HEXA

Chr 15AR

hexosaminidase subunit alpha

Also known as: TSD

This gene encodes the alpha subunit of beta-hexosaminidase A, a lysosomal enzyme that degrades GM2 ganglioside and other molecules containing terminal N-acetyl hexosamines. Biallelic mutations cause autosomal recessive GM2 gangliosidosis, including Tay-Sachs disease, due to GM2 ganglioside accumulation in neurons leading to neurodegeneration. The pathogenic mechanism involves loss of enzymatic function resulting in toxic substrate accumulation.

OMIMResearchSummary from RefSeq, OMIM, UniProt, Mechanism
LOFmechanismARLOEUF 0.973 OMIM phenotypes
Clinical SummaryHEXA
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Gene-Disease Validity (ClinGen)
Tay-Sachs disease · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
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Clinical Trials
5 active or recruiting trials — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.97LOEUF
pLI 0.000
Z-score 1.68
OE 0.68 (0.490.97)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-0.41Z-score
OE missense 1.07 (0.971.18)
297 obs / 277.8 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.68 (0.490.97)
00.351.4
Missense OE1.07 (0.971.18)
00.61.4
Synonymous OE0.96
01.21.6
LoF obs/exp: 22 / 32.3Missense obs/exp: 297 / 277.8Syn Z: 0.32
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveHEXA-related GM2-gangliosidosisLOFAR

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.6355th %ile
GOF
0.5857th %ile
LOF
0.2386th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HEXA · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold
Clinical Literature
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