HERC2

Chr 15AR

HECT and RLD domain containing E3 ubiquitin protein ligase 2

Also known as: D15F37S1, MRT38, SHEP1, jdf2, p528

This gene belongs to the HERC gene family that encodes a group of unusually large proteins, which contain multiple structural domains. All members have at least 1 copy of an N-terminal region showing homology to the cell cycle regulator RCC1 and a C-terminal HECT (homologous to E6-AP C terminus) domain found in a number of E3 ubiquitin protein ligases. Genetic variations in this gene are associated with skin/hair/eye pigmentation variability. Multiple pseudogenes of this gene are located on chromosomes 15 and 16. [provided by RefSeq, Mar 2012]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

[Skin/hair/eye pigmentation 1, blond/brown hair]MIM #227220
AR
[Skin/hair/eye pigmentation 1, blue/nonblue eyes]MIM #227220
AR
Intellectual developmental disorder, autosomal recessive 38MIM #615516
AR

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
48
Pubs (1 yr)
P/LP submissions
P/LP missense
0.20
LOEUF· LoF intol.
LOF
Mechanism· G2P
📖
GeneReview available — HERC2
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.20LOEUF
pLI 1.000
Z-score 12.07
OE 0.15 (0.120.20)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
4.42Z-score
OE missense 0.76 (0.730.79)
2105 obs / 2758.9 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.15 (0.120.20)
00.351.4
Missense OE?0.76 (0.730.79)
00.61.4
Synonymous OE?1.09
01.21.6
LoF obs/exp: 36 / 236.3Missense obs/exp: 2105 / 2758.9Syn Z: -2.51

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HERC2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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