HDAC5
Chr 17histone deacetylase 5
The protein deacetylates lysine residues on core histones and represses transcription of genes including myocyte enhancer factor MEF2C, playing a critical role in muscle maturation and epigenetic regulation. Pathogenic variants cause a neurodevelopmental disorder with intellectual disability, developmental delay, and distinctive facial features through an autosomal dominant inheritance pattern. The mechanism of pathogenicity is loss of function, as the gene is extremely intolerant to loss-of-function variants.
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Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Among the most LoF-intolerant genes (~top 3%)
Highly missense-constrained (top ~0.1%)
The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
HDAC5 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
No active trials found for this gene.
Search ClinicalTrials.gov →External Resources
Links to major genomics databases and tools