HCN2

Chr 19AD

hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2

Also known as: BCNG-2, BCNG2, EIG17, FEB2, GEFSP11, HAC-1

The protein encoded by this gene is a hyperpolarization-activated cation channel involved in the generation of native pacemaker activity in the heart and in the brain. The encoded protein is activated by cAMP and can produce a fast, large current. Defects in this gene were noted as a possible cause of some forms of epilepsy. [provided by RefSeq, Jan 2017]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

{Epilepsy, idiopathic generalized, susceptibility to, 17}MIM #602477
AD
Febrile seizures, familial, 2MIM #602477
AD
Generalized epilepsy with febrile seizures plus, type 11MIM #602477
AD

Clinical highlights

Gene-disease validity (ClinGen)
complex neurodevelopmental disorder · ARDefinitivesufficient evidence for diagnostic panels3 gene-disease associations curated in total
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
50
Pubs (1 yr)
P/LP submissions
P/LP missense
0.45
LOEUF
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Missense constrained — critical functional residues
LoF Constraint?
0.45LOEUF
pLI 0.489
Z-score 3.53
OE 0.21 (0.110.45)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
3.41Z-score
OE missense 0.53 (0.470.59)
222 obs / 418.4 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.21 (0.110.45)
00.351.4
Missense OE?0.53 (0.470.59)
00.61.4
Synonymous OE?1.55
01.21.6
LoF obs/exp: 5 / 23.5Missense obs/exp: 222 / 418.4Syn Z: -5.75

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HCN2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →