HAR1A
Chr 20highly accelerated region 1A
Also known as: HAR1F, LINC00064, NCRNA00064
60
ClinVar variants
36
Pathogenic / LP
—
pLI score
0
Active trials
Clinical Summary— HAR1A
📋
ClinVar Variants
36 Pathogenic / Likely Pathogenic· 21 VUS of 60 total submissions
Population Genetics & Constraint
Constraint data not available from gnomAD.
ClinVar Variant Classifications
60 submitted variants in ClinVar
Classification Summary
Pathogenic30
Likely Pathogenic6
VUS21
Likely Benign3
30
Pathogenic
6
Likely Pathogenic
21
VUS
3
Likely Benign
Curated Variants Distribution
Classified variants from ClinVar · 5 ACMG categories· variant type breakdown unavailable
| Classification | LoF | Missense + Inframe | Non-coding | Synonymous | Total |
|---|---|---|---|---|---|
Pathogenic | — | — | — | — | 30 |
Likely Pathogenic | — | — | — | — | 6 |
VUS | — | — | — | — | 21 |
Likely Benign | — | — | — | — | 3 |
Benign | — | — | — | — | 0 |
| Total | — | 60 | |||
Counts from ClinVar esearch · Updated hourly
View in ClinVar →Protein Context — Lollipop Plot
HAR1A · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
OMIM — Genotype-Phenotype Relationships
1 OMIM entry
HIGHLY ACCELERATED REGION GENE 1A; HAR1A
MIM #610556 · *
External Resources
Links to major genomics databases and tools
Variant Interpretation
Population Databases
Gene Resources
Expert Curation
ClinGen
Expert-curated gene-disease validity
GenCC
Gene Curation Coalition — multi-curator classifications
Orphanet
Rare disease encyclopedia and gene-disease associations
PanelApp
Gene panels for rare disease diagnostics (Genomics England)
LOVD
Leiden Open Variation Database — variant listings
GeneReviews
Expert-authored summaries of heritable conditions (NCBI)
Clinical Literature
Landmark / reviewRecent case evidence
Key Publications
Landmark & review papers · by relevance
Expression Analysis of Long Non-Coding RNA HAR1A and HAR1B in HBV-Induced Hepatocullular Carcinoma in Chinese Patients.
Shi Z et al.·Lab Med
2019Cohort
REST-dependent glioma progression occurs independently of the repression of the long non-coding RNA HAR1A.
Waters E et al.·PLoS One
2024
Top 10 resultsSearch PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
iTreg cells-secreted IL10 alleviates lupus nephritis through inactivating lncRNA HAR1A transcription to suppress SMARCD1-mediated iNOS activation.
Liu Y et al.·Autoimmunity
2024
LncRNA HAR1A inhibits non-small cell lung cancer growth by downregulating c-MYC transcripts and facilitating its proteasomal degradation.
Ma J et al.·Int Immunopharmacol
2024
METTL3-mediated deficiency of lncRNA HAR1A drives non-small cell lung cancer growth and metastasis by promoting ANXA2 stabilization.
Ling X et al.·Cell Death Discov
2024🔓 Open Access
The expression profile of HAR1A and HAR1B in the peripheral blood cells of multiple sclerosis patients.
Akbarzadeh S et al.·Mol Biol Rep
2023Cohort
Top 5 resultsSearch Europe PMC ↗
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
No active trials found for this gene.
Search ClinicalTrials.gov →External Resources
Links to major genomics databases and tools
Variant Interpretation
Population Databases
Gene Resources
Expert Curation
ClinGen
Expert-curated gene-disease validity
GenCC
Gene Curation Coalition — multi-curator classifications
Orphanet
Rare disease encyclopedia and gene-disease associations
PanelApp
Gene panels for rare disease diagnostics (Genomics England)
LOVD
Leiden Open Variation Database — variant listings
GeneReviews
Expert-authored summaries of heritable conditions (NCBI)