HACE1

Chr 6

HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1

Also known as: SPPRS

This gene encodes a HECT domain and ankyrin repeat-containing ubiquitin ligase. The encoded protein is involved in specific tagging of target proteins, leading to their subcellular localization or proteasomal degradation. The protein is a potential tumor suppressor and is involved in the pathophysiology of several tumors, including Wilm's tumor. [provided by RefSeq, Mar 2016]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtSpastic paraplegia and psychomotor retardation with or without seizures

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
16
Pubs (1 yr)
P/LP submissions
P/LP missense
0.52
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Missense constrained — critical functional residues
LoF Constraint?
0.52LOEUF
pLI 0.000
Z-score 4.35
OE 0.36 (0.250.52)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
3.59Z-score
OE missense 0.54 (0.490.60)
259 obs / 480.7 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.36 (0.250.52)
00.351.4
Missense OE?0.54 (0.490.60)
00.61.4
Synonymous OE?1.05
01.21.6
LoF obs/exp: 19 / 53.2Missense obs/exp: 259 / 480.7Syn Z: -0.47

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

HACE1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →