H3-3B

Chr 17AD

H3.3 histone B

Also known as: BRYLIB2, H3.3B, H3F3B

Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene contains introns and its mRNA is polyadenylated, unlike most histone genes. The protein encoded by this gene is a replication-independent histone that is a member of the histone H3 family. Pseudogenes of this gene have been identified on the X chromosome, and on chromosomes 5, 13 and 17. [provided by RefSeq, Oct 2015]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Bryant-Li-Bhoj neurodevelopmental syndrome 2MIM #619721
AD
UniProtGlioma

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
8
Pubs (1 yr)
P/LP submissions
P/LP missense
0.55
LOEUF
DN
Mechanism· predicted
📖
GeneReview available — H3-3B
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.55LOEUF
pLI 0.807
Z-score 2.16
OE 0.00 (0.000.55)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.88Z-score
OE missense 0.10 (0.060.18)
8 obs / 80.8 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.00 (0.000.55)
00.351.4
Missense OE?0.10 (0.060.18)
00.61.4
Synonymous OE?2.71
01.21.6
LoF obs/exp: 0 / 5.4Missense obs/exp: 8 / 80.8Syn Z: -7.71

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

H3-3B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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