H2AL3

Chr X

H2A.L variant histone 3

Also known as: H2A.L.3, H2AL1RP

The protein is a core component of nucleosomes that wraps and compacts DNA into chromatin, playing a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. Based on the provided information, no disease associations or inheritance patterns have been established for mutations in this gene. Additional clinical and genetic data would be needed to determine the pathogenic potential of variants in H2AL3.

ResearchSummary from RefSeq, UniProt
DNmechanism

Population Genetics & Constraint

Constraint data not available from gnomAD.

DN
0.6454th %ile
GOF
0.4776th %ile
LOF
0.3552th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

H2AL3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found