GYS1

Chr 19

glycogen synthase 1

Also known as: GSY, GYS

The protein encoded by this gene catalyzes the addition of glucose monomers to the growing glycogen molecule through the formation of alpha-1,4-glycoside linkages. Mutations in this gene are associated with muscle glycogen storage disease. Alternatively spliced transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Sep 2009]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtMuscle glycogen storage disease 0

Clinical highlights

Gene-disease validity (ClinGen)
glycogen storage disease due to muscle and heart glycogen synthase deficiency · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
55
Pubs (1 yr)
P/LP submissions
P/LP missense
0.53
LOEUF
DN
Mechanism· predicted
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GeneReview available — GYS1
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.53LOEUF
pLI 0.000
Z-score 3.96
OE 0.34 (0.220.53)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.84Z-score
OE missense 0.76 (0.700.83)
360 obs / 472.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.34 (0.220.53)
00.351.4
Missense OE?0.76 (0.700.83)
00.61.4
Synonymous OE?0.92
01.21.6
LoF obs/exp: 14 / 41.5Missense obs/exp: 360 / 472.5Syn Z: 0.92

ClinVar

No ClinVar data available.

Protein Context — Lollipop Plot

GYS1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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