GSDMC

Chr 8

gasdermin C

Also known as: MLZE

Gasdermin C is a pore-forming protein that, upon cleavage, creates membrane pores and triggers pyroptosis, a form of inflammatory cell death. Mutations cause autosomal dominant hearing loss, typically presenting as non-syndromic sensorineural hearing loss. The gene shows minimal constraint to loss-of-function variants, suggesting that complete loss of function may be tolerated.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
21
Pubs (1 yr)
53
P/LP submissions
0%
P/LP missense
1.25
LOEUF
DN
Mechanism· predicted
Clinical SummaryGSDMC
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
53 unique Pathogenic / Likely Pathogenic· 61 VUS of 135 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.25LOEUF
pLI 0.000
Z-score 0.58
OE 0.88 (0.621.25)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.51Z-score
OE missense 1.09 (0.991.20)
286 obs / 262.6 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.88 (0.621.25)
00.351.4
Missense OE1.09 (0.991.20)
00.61.4
Synonymous OE1.02
01.21.6
LoF obs/exp: 22 / 25.1Missense obs/exp: 286 / 262.6Syn Z: -0.13
DN
0.6357th %ile
GOF
0.6052th %ile
LOF
0.2679th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

135 submitted variants in ClinVar

Classification Summary

Pathogenic52
Likely Pathogenic1
VUS61
Likely Benign4
Benign4
52
Pathogenic
1
Likely Pathogenic
61
VUS
4
Likely Benign
4
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
52
0
52
Likely Pathogenic
0
0
1
0
1
VUS
0
59
2
0
61
Likely Benign
0
4
0
0
4
Benign
0
2
0
2
4
Total065552122

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

GSDMC · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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