GRIK2
Chr 6ARADglutamate ionotropic receptor kainate type subunit 2
Also known as: EAA4, GLR6, GLUK6, GLUR6, GluK2, MRT6, NEDLAS
This protein functions as an ionotropic glutamate receptor that forms cation-permeable channels gated by L-glutamate and kainic acid, serving as an excitatory neurotransmitter receptor in the central nervous system. Mutations cause intellectual developmental disorder and neurodevelopmental disorder with impaired language and ataxia with or without seizures, inherited in autosomal recessive or autosomal dominant patterns. The gene is highly constrained against loss-of-function variants, indicating intolerance to protein-disrupting mutations.
Moderate evidence — consider for supplementary testing
2 total gene-disease associations curated
Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Highly LoF-intolerant (top ~10% of genes)
Moderately missense-constrained (top ~2.5%)
This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and loss-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.
Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.
Literature Evidence
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
GRIK2 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
3D Protein StructureAlphaFold
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
External Resources
Links to major genomics databases and tools