GPRIN2

Chr 10

G protein regulated inducer of neurite outgrowth 2

Also known as: GRIN2, KIAA0514

The protein is predicted to be involved in neuron projection development and may play a role in neurite outgrowth at the plasma membrane. Currently, no established human diseases have been definitively linked to mutations in this gene. This gene shows tolerance to loss-of-function variants in population databases, suggesting it may not be essential for normal human development.

Summary from RefSeq, UniProt
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0
Active trials
1
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.49
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryGPRIN2
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.49LOEUF
pLI 0.000
Z-score 0.42
OE 0.86 (0.521.49)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.56Z-score
OE missense 1.10 (1.001.22)
256 obs / 231.9 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.86 (0.521.49)
00.351.4
Missense OE1.10 (1.001.22)
00.61.4
Synonymous OE1.13
01.21.6
LoF obs/exp: 9 / 10.5Missense obs/exp: 256 / 231.9Syn Z: -1.05
DN
0.6358th %ile
GOF
0.6834th %ile
LOF
0.4331th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

GPRIN2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC