GPRIN1

Chr 5

G protein regulated inducer of neurite outgrowth 1

Also known as: GRIN1

GPRIN1 encodes a protein that binds phosphoproteins and is involved in neurite outgrowth and neuron projection development at the growth cone and plasma membrane. Mutations cause autosomal recessive neurodevelopmental disorders with intellectual disability and developmental delay. This gene is highly constrained against loss-of-function mutations (pLI 0.97, LOEUF 0.32), indicating that complete loss of protein function is typically not tolerated.

OMIMResearchSummary from RefSeq, UniProt
LOFmechanismLOEUF 0.32
Clinical SummaryGPRIN1
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.97). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.32LOEUF
pLI 0.970
Z-score 3.69
OE 0.10 (0.040.32)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
0.34Z-score
OE missense 0.96 (0.891.03)
496 obs / 517.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.10 (0.040.32)
00.351.4
Missense OE0.96 (0.891.03)
00.61.4
Synonymous OE0.97
01.21.6
LoF obs/exp: 2 / 19.7Missense obs/exp: 496 / 517.6Syn Z: 0.31
DN
0.3892th %ile
GOF
0.3491th %ile
LOF
0.71top 10%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.32

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

GPRIN1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →