GPR107

Chr 9

G protein-coupled receptor 107

Also known as: GCDRP, LUSTR1, bA138E2.2

The GPR107 protein functions as a receptor for neuronostatin and is involved in glucose homeostasis by inducing glucagon release in response to low glucose levels, while also participating in clathrin-dependent endocytosis. Mutations cause an autosomal dominant neurodevelopmental disorder through a dominant-negative mechanism. The gene shows intolerance to loss-of-function variants (LOEUF 0.42), consistent with the dominant-negative pathogenic mechanism.

Summary from RefSeq, UniProt, Mechanism
Research Assistant →
0
Active trials
5
Pubs (1 yr)
32
P/LP submissions
0%
P/LP missense
0.42
LOEUF
DN
Mechanism· predicted
Clinical SummaryGPR107
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.23) despite low pLI — interpret in context.
📋
ClinVar Variants
32 unique Pathogenic / Likely Pathogenic· 88 VUS of 156 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.42LOEUF
pLI 0.289
Z-score 4.17
OE 0.23 (0.140.42)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.82Z-score
OE missense 0.71 (0.630.79)
219 obs / 309.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.23 (0.140.42)
00.351.4
Missense OE0.71 (0.630.79)
00.61.4
Synonymous OE1.01
01.21.6
LoF obs/exp: 8 / 34.4Missense obs/exp: 219 / 309.3Syn Z: -0.13
DN
0.6743th %ile
GOF
0.6151th %ile
LOF
0.3744th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

156 submitted variants in ClinVar

Classification Summary

Pathogenic30
Likely Pathogenic2
VUS88
Likely Benign2
30
Pathogenic
2
Likely Pathogenic
88
VUS
2
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
30
0
30
Likely Pathogenic
0
0
2
0
2
VUS
1
75
12
0
88
Likely Benign
0
2
0
0
2
Benign
0
0
0
0
0
Total177440122

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

GPR107 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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