GPHN

Chr 14

gephyrin

Also known as: GEPH, GPH, GPHRYN, HKPX1, MOCODC

This gene encodes a neuronal assembly protein that anchors inhibitory neurotransmitter receptors to the postsynaptic cytoskeleton via high affinity binding to a receptor subunit domain and tubulin dimers. In nonneuronal tissues, the encoded protein is also required for molybdenum cofactor biosynthesis. Mutations in this gene may be associated with the neurological condition hyperplexia and also lead to molybdenum cofactor deficiency. Numerous alternatively spliced transcript variants encoding different isoforms have been described; however, the full-length nature of all transcript variants is not currently known. [provided by RefSeq, Jul 2008]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtMolybdenum cofactor deficiency, type C

Clinical highlights

Gene-disease validity (ClinGen)
sulfite oxidase deficiency due to molybdenum cofactor deficiency type C · ARModerateconsider for supplementary testing
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
10
Pubs (1 yr)
P/LP submissions
P/LP missense
0.18
LOEUF· LoF intol.
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.18LOEUF
pLI 1.000
Z-score 5.72
OE 0.07 (0.030.18)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
3.44Z-score
OE missense 0.54 (0.480.60)
239 obs / 442.9 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.07 (0.030.18)
00.351.4
Missense OE?0.54 (0.480.60)
00.61.4
Synonymous OE?0.98
01.21.6
LoF obs/exp: 3 / 43.9Missense obs/exp: 239 / 442.9Syn Z: 0.21

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

GPHN · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.