GP1BB

Chr 22AR

glycoprotein Ib platelet subunit beta

Also known as: BDPLT1, BS, CD42C, GP-Ib beta, GPIBB, GPIbbeta

The GP1BB gene encodes the beta subunit of platelet glycoprotein Ib, which forms part of the GPIb-V-IX receptor complex that binds von Willebrand factor and mediates platelet adhesion in arterial circulation. Mutations cause Bernard-Soulier syndrome type B and isolated giant platelet disorder, both characterized by bleeding disorders due to defective platelet function. These conditions follow autosomal recessive inheritance.

OMIMResearchSummary from RefSeq, OMIM, UniProt
MultiplemechanismARLOEUF 1.332 OMIM phenotypes
Clinical SummaryGP1BB
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Gene-Disease Validity (ClinGen)
Bernard-Soulier syndrome · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.51) — some intolerance to loss-of-function variants.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
1.33LOEUF
pLI 0.512
Z-score 1.33
OE 0.00 (0.001.33)
Moderately constrained

Highly tolerant — LoF variants common in population

Missense Constraint
0.46Z-score
OE missense 0.84 (0.671.05)
53 obs / 63.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.00 (0.001.33)
00.351.4
Missense OE0.84 (0.671.05)
00.61.4
Synonymous OE1.14
01.21.6
LoF obs/exp: 0 / 2.0Missense obs/exp: 53 / 63.3Syn Z: -0.64
DN
0.6552th %ile
GOF
0.80top 10%
LOF
0.3648th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

GP1BB · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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