GLYCTK

Chr 3AR

glycerate kinase

Also known as: HBEBP2, HBEBP4, HBeAgBP4A

This locus encodes a member of the glycerate kinase type-2 family. The encoded enzyme catalyzes the phosphorylation of (R)-glycerate and may be involved in serine degradation and fructose metabolism. Decreased activity of the encoded enzyme may be associated with the disease D-glyceric aciduria. Alternatively spliced transcript variants have been described. [provided by RefSeq, Jan 2009]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

D-glyceric aciduriaMIM #220120
AR

Clinical highlights

Gene-disease validity (ClinGen)
D-glyceric aciduria · ARModerateconsider for supplementary testing
0
Active trials
6
Pubs (1 yr)
P/LP submissions
P/LP missense
1.60
LOEUF
DN
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.60LOEUF
pLI 0.000
Z-score -0.17
OE 1.05 (0.701.60)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-0.23Z-score
OE missense 1.04 (0.951.13)
333 obs / 321.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?1.05 (0.701.60)
00.351.4
Missense OE?1.04 (0.951.13)
00.61.4
Synonymous OE?1.05
01.21.6
LoF obs/exp: 15 / 14.3Missense obs/exp: 333 / 321.5Syn Z: -0.50

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

GLYCTK · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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