GLIS3

Chr 9

GLIS family zinc finger 3

Also known as: NDH, ZNF515

This gene is a member of the GLI-similar zinc finger protein family and encodes a nuclear protein with five C2H2-type zinc finger domains. This protein functions as both a repressor and activator of transcription and is specifically involved in the development of pancreatic beta cells, the thyroid, eye, liver and kidney. Mutations in this gene have been associated with neonatal diabetes and congenital hypothyroidism (NDH). Alternatively spliced variants that encode different protein isoforms have been described but the full-length nature of only two have been determined. [provided by RefSeq, Jul 2008]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtDiabetes mellitus, neonatal, with congenital hypothyroidism

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
2
Active trials
34
Pubs (1 yr)
P/LP submissions
P/LP missense
0.74
LOEUF
LOF
Mechanism· G2P
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GeneReview available — GLIS3
Authoritative clinical overview · Recommended first read
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.74LOEUF
pLI 0.000
Z-score 2.81
OE 0.50 (0.340.74)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-3.14Z-score
OE missense 1.37 (1.291.46)
772 obs / 562.7 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.50 (0.340.74)
00.351.4
Missense OE?1.37 (1.291.46)
00.61.4
Synonymous OE?1.38
01.21.6
LoF obs/exp: 18 / 36.3Missense obs/exp: 772 / 562.7Syn Z: -4.73

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

GLIS3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.