GJA1
Chr 6ARADgap junction protein alpha 1
The encoded protein forms connexin 43, the major gap junction protein that creates intercellular channels allowing diffusion of small molecules between cells, particularly important for synchronized cardiac contraction and embryonic development. Mutations cause oculodentodigital dysplasia, craniometaphyseal dysplasia, erythrokeratodermia variabilis et progressiva, and syndactyly through both autosomal dominant and autosomal recessive inheritance patterns. Disease can result from multiple mechanisms including gain-of-function effects from specific mutations that disrupt normal gap junction function.
Limited evidence — not for standalone diagnostic reporting
2 total gene-disease associations curated
Some data sources returned errors (1)
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Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Typical tolerance to LoF variation
Mild missense constraint
This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.
Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.
Literature Evidence
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
GJA1 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
3D Protein StructureAlphaFold
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
No active trials found for this gene.
Search ClinicalTrials.gov →External Resources
Links to major genomics databases and tools