GCSAM

Chr 3

germinal center associated signaling and motility

Also known as: GCAT2, GCET2, HGAL

This gene encodes a protein which may function in signal transduction pathways and whose expression is elevated in germinal cell lymphomas. It contains a putative PDZ-interacting domain, an immunoreceptor tyrosine-based activation motif (ITAM), and two putative SH2 binding sites. In B cells, its expression is specifically induced by interleukin-4. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

ResearchGenerating clinical summary…
0
Active trials
4
Pubs (1 yr)
P/LP submissions
P/LP missense
1.00
LOEUF
Multiple*
Mechanism· predicted
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.00LOEUF
pLI 0.064
Z-score 1.59
OE 0.39 (0.171.00)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.49Z-score
OE missense 0.86 (0.721.03)
83 obs / 96.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.39 (0.171.00)
00.351.4
Missense OE?0.86 (0.721.03)
00.61.4
Synonymous OE?1.06
01.21.6
LoF obs/exp: 3 / 7.8Missense obs/exp: 83 / 96.6Syn Z: -0.28

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

GCSAM · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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