GCH1

Chr 14

GTP cyclohydrolase 1

Also known as: DYT14, DYT5, DYT5a, GCH, GTP-CH-1, GTPCH1, HPABH4B

This gene encodes a member of the GTP cyclohydrolase family. The encoded protein is the first and rate-limiting enzyme in tetrahydrobiopterin (BH4) biosynthesis, catalyzing the conversion of GTP into 7,8-dihydroneopterin triphosphate. BH4 is an essential cofactor required by aromatic amino acid hydroxylases as well as nitric oxide synthases. Mutations in this gene are associated with malignant hyperphenylalaninemia and dopa-responsive dystonia. Several alternatively spliced transcript variants encoding different isoforms have been described; however, not all variants give rise to a functional enzyme. [provided by RefSeq, Jul 2008]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtHyperphenylalaninemia, BH4-deficient, B
UniProtDystonia, dopa-responsive

Clinical highlights

Management implications
Dramatic, sustained response to low-dose levodopa — warrant a diagnostic trial in childhood dystonia.A levodopa trial is warranted in any childhood-onset dystonia — DRD responds dramatically and durably.
Gene-disease validity (ClinGen)
GTP cyclohydrolase I deficiency · SDDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
3
Active trials
102
Pubs (1 yr)
P/LP submissions
P/LP missense
0.40
LOEUF
LOF
Mechanism· predicted
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GeneReview available — GCH1
Authoritative clinical overview · Recommended first read
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Treatment implicationsTreatable
Dopa-responsive dystonia (Segawa syndrome) / GTP-cyclohydrolase-1 deficiency

A levodopa trial is warranted in any childhood-onset dystonia — DRD responds dramatically and durably.

Dramatic, sustained response to low-dose levodopa — warrant a diagnostic trial in childhood dystonia.

Treatment of choice

levodopa (low-dosesustained response)

Wijemanne & Jankovic 2015, Lancet Neurol. Confirm with a neurologist and current guidelines. Functional class (GOF/LOF) is from published functional/segregation data, never inferred from the variant. As of 2026-07. Curated from the clinical genetics/neurology literature (cited per gene). Decision-support, not prescribing.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.40LOEUF
pLI 0.903
Z-score 2.93
OE 0.08 (0.030.40)
Highly constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.52Z-score
OE missense 0.63 (0.530.76)
86 obs / 135.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.08 (0.030.40)
00.351.4
Missense OE?0.63 (0.530.76)
00.61.4
Synonymous OE?1.16
01.21.6
LoF obs/exp: 1 / 11.9Missense obs/exp: 86 / 135.8Syn Z: -0.90

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

GCH1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.